lp://staging/ubuntu/trusty-proposed/gromacs

Branch merges

Propose for merging

No branches dependent on this one.

Related source package recipes

No recipes using this branch. (?)

Create packaging recipe

Related snap packages

Related bugs

Related blueprints

22. By Logan Rosen on 2013-12-14

No-change rebuild for libopenmpi1.3 -> libopenmpi1.6 transition.

21. By Nicholas Breen <email address hidden> on 2013-12-09

* New upstream release.
* rules: Override autodetection of CPU extensions on amd64 and i386;
  force to SSE2 only, and provide new DEB_BUILD_OPTIONS=cpuopt flag to
  re-enable autodetection for local builds. (Closes: #725013)
* rules: Fix misplaced COPYING symlink in gromacs-data.
* source/lintian-overrides: Add overrides for outstanding lintian bugs
  #729096 (newer policy version), #724866 (libmpich-dev not virtual).
* patches/20_manpages.patch: Fix formatting errors in the NAME line of
  several man pages.
* gromacs-data.doc-base: Change root to getting_started.html. The
  shipped HTML documentation is slowly being eliminated in favor of a
  wiki on gromacs.org.

20. By Nicholas Breen <email address hidden> on 2013-09-29

* control: Add versioned Build-Depends on libmpich-dev (>= 3), to prevent
  build failures on architectures where that still represents the old
  MPICH version 1.
* rules: More mpich2 -> mpich replacements.

19. By Nicholas Breen <email address hidden> on 2013-09-29

* control:
  - Move Replaces/Breaks to MPI packages instead. (Closes: #718001)
  - Move all mpich2 dependencies to new mpich (v3) package names.
* control, rules:
  - Add ppc64 to list of supported architectures for gromacs-openmpi.
  - Temporarily add use of "chrpath -d" on gromacs-mpich binaries, due
    to mpicc.mpich setting RPATH unconditionally (see #724864).

18. By Nicholas Breen <email address hidden> on 2013-08-11

* control:
  - Add B-Ds for external BLAS/LAPACK libraries.
  - Have -dev Replaces/Breaks earlier versions of -openmpi/-mpich
    to handle file move. (Closes: #718001)
  - For gromacs, remove Conflicts with a long-obsolete (before squeeze)
    version of radiance, and add Suggests on pymol for visualization.
* rules: Specify verbose output from CMake.

17. By Nicholas Breen <email address hidden> on 2013-07-05

* New upstream release; post-freeze, uploading to unstable.
* rules, control: Remove special provisions for FORTRAN on Alpha.
* rules: Update configuration parameters.
* rules, patches/12_copyright-file.patch: Avoid duplication of copyright
  information into two files, but provide a link to keep both filenames.
* control: Drop obsolete B-D on lesstif2-dev. (Closes: #714753)
* rules: Move .so symlinks for MPI libraries from -dev to their respective
  packages, to ensure that they can't be installed without their targets.
* control: Update SCM links.

16. By Nicholas Breen <email address hidden> on 2012-06-09

[ Andreas Tille ]
* debian/upstream:
   - copied citations from tasks/bio to debian/upstream
   - make last citation conform to BibTeX syntax

[ Nicholas Breen ]
* Update to current release-4.5-patches git (f361fa9c) via addition of
  patches/10_release-4.5-patches.patch.
* source/format: Move to 3.0 (quilt). Adjust patches accordingly.
* control: Remove specific listing of MPI packages from description of
  gromacs-dev. (Closes: #644820) Update maintainer address and drop
  DMUA stanza. Drop Build-Depends on dpatch, add on hardening-wrapper.
  Update to S-V 3.9.3, no packaging changes required.
* rules, README.source: Remove dpatch cruft.
* rules: Apply compiler hardening flags with hardening-wrapper.
* patches/*: Tidy up with DEP-3 headers.
* control, rules: Update list of architectures for gromacs-openmpi,
  adding armel, armhf, powerpcspe, and sparc64.

15. By Nicholas Breen on 2011-09-21

* New upstream release.
  - Remove patches/30_git_release-4.5-patches.dpatch.
  - man/g_dos.1: Create man page for new binary.
* rules: Add build-arch/build-indep targets. Add preliminary support for
  building GPU-accelerated binaries: set DEB_BUILD_OPTIONS=gpu to try it.
* patches/31_manpages.dpatch: Update.

14. By Nicholas Breen on 2011-04-25

* control: remove obsolete Build-Depends and Suggests on libice-dev,
  libsm-dev, libxext-dev, libxp-dev, libxt-dev. Update Standards-Version
  to 3.9.2.
* patches/30_git_release-4.5-patches.dpatch: Routine update from upstream
  git, to commit 873563ef of 22 April 2011.
* patches/31_manpages.dpatch: Various minor spelling and header fixes.
* lintian-overrides.gromacs: Remove checks no longer needed, per #120323.
* rules: Switch to using dh_lintian.

13. By Nicholas Breen on 2011-03-21

* New upstream release.
* Remove gromacs-lam transitional package.
* man/g_options.1: Create man page for new binary.
* lintian-overrides.gromacs-data: Override script-not-executable for demo
  scripts not in $PATH.