lp://staging/ubuntu/lucid/gromacs

Created by James Westby and last modified
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Review team:
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Status:
Development

Recent revisions

13. By Nicholas Breen

* New upstream release.
* patches/30_git_release-4.0-patches.dpatch: Empty out, replace with
  fresh pull starting at the 4.0.7 release; current to git commit
  665dce86638df8ac1062b0b022d7827ea0f11788.

12. By Nicholas Breen

* Transition to only the two supported MPI implementations:
  - gromacs-mpich now builds against MPICH2, not MPICH1.
  - gromacs-lam replaced with a dummy package installing gromacs-
    openmpi on all supported architectures, -mpich on the holdouts.
  - Update documentation accordingly.
* patches/30_git_release-4.0-patches.dpatch: Pull from upstream git
  repository, release-4.0-patches branch. Current to git commit
  37a4dd35fec7579ca7faca25c62c71cf1d8e1621, 29 Nov. 2009.
* patches/21_makefile_dups.dpatch: Delete, incorporated above
  (commit c93db8511af09c144fe4b2b8f57b14a5ad1e6cc7).
* compat: Update to debhelper v7 mode.
  - rules: Replace dh_clean -k with dh_prep.
  - control: Adjust Build-Depends to debhelper (>= 7.0.0).
* copyright: Increment year.
* rules: Use chrpath to eliminate RPATH from MPICH2-compiled binaries.
  This is a workaround for a libmpich2-dev bug, #558960.
  - control: Add chrpath to Build-Depends.
* rules: Add -Wl,--as-needed to LDFLAGS.

11. By Nicholas Breen

* patches/21_makefile_dups.dpatch: Eliminate duplicated files in the
  installation list of include/Makefile.am. Automake 1.11 now passes
  multiple files to `install' at once, causing failures when one name
  is given twice. (Closes: #543059)
* control: Increment S-V to 3.8.3. No changes required.
* rules: Remove obsolete --disable-nice option from *_CONFIG_PARAMS.
* man/gromacs.7: Update macros for lintian cleanliness.

10. By Nicholas Breen

* patches/20_altivec_kernel.dpatch: Extend patch to cover
  nb_kernel_ppc_altivec.c, which does not include the same headers.
* control: Increment Standards-Version to 3.8.2. No packaging changes
  required.

9. By Nicholas Breen

* New upstream release.
* debian/control: Bump Standards-Version to 3.8.1. No packaging
  changes required.
* debian/control: Replace svn+ssh:// URI with svn:// .
* debian/copyright: Replace "(C)" with "Copyright", update dates.
* debian/rules: #452047 rears its ugly head again! Add LDFLAGS to -lam
  and -openmpi builds with -L arguments to their respective library
  directories, exclusive of update-alternatives trickery, in order to
  prevent accidental cross-linking. Thanks again to Manuel Prinz.
  (Closes: #526266)

8. By Nicholas Breen

* New upstream release.
* patches/05_lt_init.dpatch: Add LT_INIT to configure.ac so that the
  libtool script can find its version. Necessary for current Ubuntu
  build environment. Patch courtesy of James Westby.

7. By Nicholas Breen

* New upstream release.
* Remove obsoleted patches 40, 41, 50, 51, 52.

6. By Nicholas Breen

* New upstream release.
  - Remove obsoleted debian/patches/50_confio.dpatch (fixed),
    10_manpages.dpatch (merged upstream).
* debian/gromacs.README.Debian: suggest OpenMPI for new installations.

5. By Nicholas Breen

[ Daniel Leidert ]
* debian/gromacs-data.doc-base (Section): Fixed accordingly to latest
  doc-base policy 0.8.10.

[ Nicholas Breen ]
* debian/README.source: add reference to dpatch system, as required by
  latest policy (sec. 4.14). Having done so:
* debian/control: Update Standards-Version to 3.8.0.
* debian/rules: Remove obsolete and now-inaccurate comment about
  parallel builds. Remove duplicated dh_installdeb call.
* debian/man/g_kinetics.1: Update documentation.
* debian/patches/05_autoconf_gsl.dpatch: libgsl was not properly
  detected by autoconf when the test didn't also link libgslcblas,
  rendering the g_kinetics program unusable. This changes the test
  to pass along LIBS appropriately.

4. By Nicholas Breen

* debian/control: Eliminate unneeded Build-Depends on libxml-dev.
  Spotted by Pierre Habouzit. (Closes: #470000)
* debian/rules: Force --with-gsl in configuration.

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