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htslib package

htslib 1.10.2-3 source package in Ubuntu

Changelog

htslib (1.10.2-3) unstable; urgency=medium

  [ Andreas Tille ]
  * d/copyright: Add Upstream-Contact

  [ Michael R. Crusoe ]
  * Patch from upstream for big-endian systems. Closes: #947462
  * Mark htslib-tests as Multi-Arch: foreign
  * Standards-Version: 4.5.0 (routine-update)
  * Set upstream metadata fields: Bug-Submit.
  * add Build-Depends-Package: libhts-dev to debian/libhts3.symbols
  * debian/rules: add hack to autoconf not forget MMAP with cross building
  * pass the same flags to test and install as build
  * debian/rules: match upstream's default flags
  * debian/libhts3.symbols: remove erronously exported symbols

 -- Michael R. Crusoe <email address hidden>  Thu, 13 Feb 2020 19:25:04 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release universe misc

Downloads

File Size SHA-256 Checksum
htslib_1.10.2-3.dsc 2.3 KiB 3cc7dce34dfe37c7a25780bb897742b20f770e96e35fcc39529e0e2f807d56e1
htslib_1.10.2.orig.tar.bz2 1.2 MiB e3b543de2f71723830a1e0472cf5489ec27d0fbeb46b1103e14a11b7177d1939
htslib_1.10.2-3.debian.tar.xz 16.5 KiB a2396dbd49a516a7c54e8bd9d5913c50a2b038f23ea7f6a91225d7a953d57e2a

No changes file available.

Binary packages built by this source

htslib-test: Test data for HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains test files and scripts for the HTSlib.

libhts-dev: development files for the HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains development files for the HTSlib: headers, static
 library, manual pages, etc.

libhts3: C library for high-throughput sequencing data formats

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.

libhts3-dbgsym: debug symbols for libhts3
tabix: generic indexer for TAB-delimited genome position files

 Tabix indexes files where some columns indicate sequence coordinates: name
 (usually a chromosome), start and stop. The input data file must be position
 sorted and compressed by bgzip (provided in this package), which has a gzip
 like interface. After indexing, tabix is able to quickly retrieve data lines by
 chromosomal coordinates. Fast data retrieval also works over network if an URI
 is given as a file name.
 .
 This version of tabix is built from the HTSlib source.

tabix-dbgsym: debug symbols for tabix